../../tmp/servers/virsirnadb/787200576
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1201 | 1 | agtcacggctagctgtgaa | 19 | |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9458 | ................... | 9476 | 100 |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9522 | ................... | 9540 | 100 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9522 | ................... | 9540 | 100 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9522 | ................... | 9540 | 100 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9471 | ................... | 9489 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9518 | ................... | 9536 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9518 | ................... | 9536 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9519 | ................... | 9537 | 100 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9456 | ................... | 9474 | 100 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9528 | ................... | 9546 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9523 | ................... | 9541 | 100 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9461 | ................... | 9479 | 100 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9583 | ................... | 9601 | 100 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9616 | ................... | 9634 | 100 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9576 | ................... | 9594 | 100 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9541 | ................... | 9559 | 100 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9577 | ................... | 9595 | 100 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9533 | ................... | 9551 | 100 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9539 | ................... | 9557 | 100 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9494 | ................... | 9512 | 100 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9494 | ................... | 9512 | 100 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9470 | ................... | 9488 | 100 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9508 | ................... | 9526 | 100 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9521 | ................... | 9539 | 100 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9510 | ................... | 9528 | 100 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9601 | ................... | 9619 | 100 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9582 | ................... | 9600 | 100 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9601 | ................... | 9619 | 100 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9564 | ................... | 9582 | 100 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9614 | ................... | 9632 | 100 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9606 | ................... | 9624 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9532 | ................... | 9550 | 100 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9534 | ................... | 9552 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9539 | ................... | 9557 | 100 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9510 | ................... | 9528 | 100 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9500 | ................... | 9518 | 100 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9612 | ................... | 9630 | 100 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9538 | ................... | 9556 | 100 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9524 | ................... | 9542 | 100 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9545 | ................... | 9563 | 100 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9510 | ................... | 9528 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9528 | ................... | 9546 | 100 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9482 | ................... | 9500 | 100 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9522 | ................... | 9540 | 100 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9589 | ................... | 9607 | 100 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9482 | ................... | 9500 | 100 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9544 | ................... | 9562 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9526 | ................... | 9544 | 100 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9510 | ................... | 9528 | 100 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9510 | ................... | 9528 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9510 | ................... | 9528 | 100 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9513 | ................... | 9531 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9536 | ................... | 9554 | 100 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9521 | ................... | 9539 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9569 | ................... | 9587 | 100 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 9516 | ................... | 9534 | 100 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9551 | ................... | 9569 | 100 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9634 | ................... | 9652 | 100 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9569 | ................... | 9587 | 100 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9598 | _.................. | 9615 | 94 |
| EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 9315 | .................._ | 9332 | 94 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 9287 | .................._ | 9304 | 94 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9623 | ...........c....... | 9641 | 94 |
| EU155294.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet | 9276 | ..............a..._ | 9293 | 89 |
| EU155247.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete | 9306 | ...g.............._ | 9323 | 89 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 9477 | .............._____ | 9490 | 73 |
| AJ851228.1 | Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori | 9469 | .............______ | 9481 | 68 |